Hi,
I look into the various information from Adobe's forum and I find this usefull video :
After that I tried another thing just to be sure.
When you create your MSI package, during the "Configuration" page, select "Ignore conflicts and continue installation".
Before using SCCM to deploy this MSI, I tried locally from a command prompt (run as)
msiexec /i AdobePhotoshopCS6.msi (without any parameter) to view the installation progress.
At the end it works fine and the software has been installed properly.
Now il will be able to try through SCCM.
I would add, that the MSI package created with AAMEE can be used with SCCM or any other tool that can push/upload the package (folder container).
SCCM is a basic tool that upload the package to the destination (WS), once done, a command line (or batch file) will be ran from the WS.