I did install them according to the instructions, that is the problem. Even though they have been included in the package, the majority of the applications fail to install without error. I believe it is because they fail to download to the exceptions folder when the packages are created. Here is what I used to install ALL the packages in the exceptions folder "
The following command is used to deploy all the packages in the Exceptions folder (except the Acrobat for Windows package if present) The --mode=post option specifies that Exceptions Deployer Application is run after the main package has been deployed. Note that the --installLanguage option is not required here. Also, because the --INSTALLDIR option has not been specified, the exception payload will be deployed in the default location specified within the payload.
ExceptionDeployer --workflow=install --mode=post"